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Sample GSM1009736 Query DataSets for GSM1009736
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 82
Sample type genomic
Source name whole blood 82
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R02C02
well id: D09
age: 27
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.440919 5384
cg00000108 0.9171763 18868
cg00000109 0.8780174 10795
cg00000165 0.1757597 8588
cg00000236 0.6424451 10648
cg00000289 0.5606131 4206
cg00000292 0.8052995 17260
cg00000321 0.2555066 18741
cg00000363 0.3412326 23995
cg00000622 0.01226026 24614
cg00000658 0.8749092 15041
cg00000714 0.2032518 30591
cg00000721 0.9324661 12738
cg00000734 0.04698481 20247
cg00000769 0.03669613 16305
cg00000807 0.7847375 28126
cg00000884 0.8435387 10695
cg00000905 0.05758325 13654
cg00000924 0.5010331 27970
cg00000948 0.8956401 21460

Total number of rows: 485577

Table truncated, full table size 12836 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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