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Sample GSM1009735 Query DataSets for GSM1009735
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 81
Sample type genomic
Source name whole blood 81
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R06C02
well id: D11
age: 24
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4797315 7646
cg00000108 0.9230147 28334
cg00000109 0.8616887 13413
cg00000165 0.1191962 10798
cg00000236 0.6228784 15985
cg00000289 0.5800813 4820
cg00000292 0.8008465 21873
cg00000321 0.2292868 25222
cg00000363 0.3093797 35093
cg00000622 0.01656514 42580
cg00000658 0.7967567 22346
cg00000714 0.1938479 48046
cg00000721 0.9220138 19147
cg00000734 0.0617533 32125
cg00000769 0.02903378 27523
cg00000807 0.7987643 41657
cg00000884 0.8372039 12861
cg00000905 0.05802112 21013
cg00000924 0.4751014 43316
cg00000948 0.8693644 31951

Total number of rows: 485577

Table truncated, full table size 12876 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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