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Sample GSM1009734 Query DataSets for GSM1009734
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 80
Sample type genomic
Source name whole blood 80
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R03C02
well id: A11
age: 50
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3894951 8239
cg00000108 0.9408738 20111
cg00000109 0.8417519 12709
cg00000165 0.1486981 9194
cg00000236 0.6666411 12928
cg00000289 0.7026689 4696
cg00000292 0.8189775 20809
cg00000321 0.2967773 20535
cg00000363 0.3739533 29040
cg00000622 0.02598319 29650
cg00000658 0.8610967 19158
cg00000714 0.1980791 34987
cg00000721 0.9247035 15080
cg00000734 0.06666964 22294
cg00000769 0.03820768 21414
cg00000807 0.8052674 32288
cg00000884 0.8827418 11396
cg00000905 0.07168663 15677
cg00000924 0.4819672 34060
cg00000948 0.8925107 25670

Total number of rows: 485577

Table truncated, full table size 12851 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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