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Sample GSM1009733 Query DataSets for GSM1009733
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 79
Sample type genomic
Source name whole blood 79
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R03C01
well id: G02
age: 25
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4424032 5942
cg00000108 0.9332821 20719
cg00000109 0.8679729 10822
cg00000165 0.1390978 8412
cg00000236 0.7373574 13485
cg00000289 0.6023112 4919
cg00000292 0.8613658 19859
cg00000321 0.3101014 20016
cg00000363 0.3408857 24219
cg00000622 0.01277153 27383
cg00000658 0.8384621 13061
cg00000714 0.2388286 38078
cg00000721 0.9188018 16058
cg00000734 0.06334316 22286
cg00000769 0.02623317 18693
cg00000807 0.8187956 29375
cg00000884 0.8691545 10485
cg00000905 0.05914806 15488
cg00000924 0.5167364 31448
cg00000948 0.893591 21994

Total number of rows: 485577

Table truncated, full table size 12846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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