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Sample GSM1009732 Query DataSets for GSM1009732
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 78
Sample type genomic
Source name whole blood 78
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R03C01
well id: C04
age: 52
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.425838 7060
cg00000108 0.9577554 23548
cg00000109 0.8662614 11086
cg00000165 0.1876319 7953
cg00000236 0.7627146 12366
cg00000289 0.6366574 4232
cg00000292 0.8241787 19107
cg00000321 0.2910644 19339
cg00000363 0.4189008 25973
cg00000622 0.01528337 27708
cg00000658 0.8673849 15773
cg00000714 0.2355277 37679
cg00000721 0.928143 15737
cg00000734 0.06981211 23850
cg00000769 0.02906328 23194
cg00000807 0.8190768 33218
cg00000884 0.8684965 11413
cg00000905 0.07586685 14320
cg00000924 0.5305359 37839
cg00000948 0.8909947 27073

Total number of rows: 485577

Table truncated, full table size 12837 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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