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Sample GSM1009731 Query DataSets for GSM1009731
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 77
Sample type genomic
Source name whole blood 77
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R06C01
well id: F04
age: 19
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.437241 7381
cg00000108 0.9297129 34942
cg00000109 0.823954 18185
cg00000165 0.1522098 14426
cg00000236 0.6628383 17749
cg00000289 0.5846364 6487
cg00000292 0.8066514 31382
cg00000321 0.1852544 28790
cg00000363 0.3172541 40470
cg00000622 0.01346568 41710
cg00000658 0.8607007 19936
cg00000714 0.2270306 52285
cg00000721 0.9315155 23847
cg00000734 0.06883153 32327
cg00000769 0.02699931 30123
cg00000807 0.8169129 46397
cg00000884 0.8517637 13338
cg00000905 0.06585421 22055
cg00000924 0.5235451 53032
cg00000948 0.9115353 36570

Total number of rows: 485577

Table truncated, full table size 12882 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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