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Sample GSM1009730 Query DataSets for GSM1009730
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 76
Sample type genomic
Source name whole blood 76
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R03C01
well id: C07
age: 36
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4197708 6182
cg00000108 0.9280711 16319
cg00000109 0.8738912 6664
cg00000165 0.1622942 7066
cg00000236 0.6711571 8214
cg00000289 0.4730151 4069
cg00000292 0.8062313 18644
cg00000321 0.242148 19099
cg00000363 0.355426 23573
cg00000622 0.01322594 31807
cg00000658 0.8608403 14466
cg00000714 0.2385646 40585
cg00000721 0.9042755 9396
cg00000734 0.0575175 24762
cg00000769 0.03474955 22260
cg00000807 0.77196 34793
cg00000884 0.8446384 8377
cg00000905 0.05743048 12019
cg00000924 0.4703219 32365
cg00000948 0.8531057 26545

Total number of rows: 485577

Table truncated, full table size 12813 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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