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Sample GSM1009729 Query DataSets for GSM1009729
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 75
Sample type genomic
Source name whole blood 75
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R02C02
well id: D12
age: 54
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4213783 5719
cg00000108 0.9300754 17805
cg00000109 0.8476796 10588
cg00000165 0.1750281 7893
cg00000236 0.6398242 10592
cg00000289 0.630917 4273
cg00000292 0.8053043 17810
cg00000321 0.2525295 16504
cg00000363 0.3507456 22968
cg00000622 0.01316241 23224
cg00000658 0.8261223 15871
cg00000714 0.2182306 28599
cg00000721 0.9281241 12992
cg00000734 0.05718992 17508
cg00000769 0.04096186 17990
cg00000807 0.8086379 27476
cg00000884 0.8552548 9282
cg00000905 0.08524343 11854
cg00000924 0.5084949 27505
cg00000948 0.8637361 22694

Total number of rows: 485577

Table truncated, full table size 12823 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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