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Sample GSM1009728 Query DataSets for GSM1009728
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 74
Sample type genomic
Source name whole blood 74
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R06C01
well id: F01
age: 29
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4203532 5619
cg00000108 0.9221532 28212
cg00000109 0.8717642 12455
cg00000165 0.1237053 10231
cg00000236 0.645861 14928
cg00000289 0.5193736 4881
cg00000292 0.8301417 26793
cg00000321 0.1746812 25936
cg00000363 0.3798606 38938
cg00000622 0.005455138 36746
cg00000658 0.852455 16417
cg00000714 0.174017 50487
cg00000721 0.9547473 18816
cg00000734 0.0522445 32669
cg00000769 0.03105917 24627
cg00000807 0.8048348 42715
cg00000884 0.8069311 10865
cg00000905 0.04931885 17297
cg00000924 0.479367 43059
cg00000948 0.8809253 32409

Total number of rows: 485577

Table truncated, full table size 12867 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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