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Sample GSM1009727 Query DataSets for GSM1009727
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 73
Sample type genomic
Source name whole blood 73
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R02C01
well id: B10
age: 34
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3887037 5601
cg00000108 0.9343863 18387
cg00000109 0.8765534 9556
cg00000165 0.1448733 6844
cg00000236 0.6636737 10369
cg00000289 0.5808995 3324
cg00000292 0.8064986 17750
cg00000321 0.3126658 17996
cg00000363 0.3368163 23156
cg00000622 0.01176041 27280
cg00000658 0.8088773 16842
cg00000714 0.2123314 33343
cg00000721 0.9129158 11142
cg00000734 0.06642084 20782
cg00000769 0.01538378 18361
cg00000807 0.7905684 28315
cg00000884 0.828267 9473
cg00000905 0.05854109 10730
cg00000924 0.4854676 28044
cg00000948 0.8827951 22382

Total number of rows: 485577

Table truncated, full table size 12817 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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