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Sample GSM1009726 Query DataSets for GSM1009726
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 72
Sample type genomic
Source name whole blood 72
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R01C01
well id: E05
age: 40
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: no
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.2802511 3404
cg00000108 0.9467571 17292
cg00000109 0.8493675 9307
cg00000165 0.1657947 5443
cg00000236 0.6638293 9416
cg00000289 0.5896763 3329
cg00000292 0.8171005 15958
cg00000321 0.2305656 13124
cg00000363 0.3013531 19485
cg00000622 0.017448 21679
cg00000658 0.8617727 10144
cg00000714 0.1809943 27376
cg00000721 0.9089378 12364
cg00000734 0.06709982 17292
cg00000769 0.04163289 17170
cg00000807 0.8302779 24446
cg00000884 0.8010336 7640
cg00000905 0.05964944 11082
cg00000924 0.5018037 24017
cg00000948 0.8806711 20046

Total number of rows: 485577

Table truncated, full table size 12792 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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