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Sample GSM1009725 Query DataSets for GSM1009725
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 71
Sample type genomic
Source name whole blood 71
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R02C02
well id: D03
age: 30
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3983337 4341
cg00000108 0.908529 18343
cg00000109 0.8908572 10400
cg00000165 0.1265782 6157
cg00000236 0.6551411 10919
cg00000289 0.6031843 3166
cg00000292 0.8336921 17091
cg00000321 0.2317011 15666
cg00000363 0.3333645 21273
cg00000622 0.02129531 26056
cg00000658 0.8636555 11789
cg00000714 0.1976775 34259
cg00000721 0.9155221 11986
cg00000734 0.06185043 21549
cg00000769 0.02621539 18248
cg00000807 0.8090478 27310
cg00000884 0.7931641 9555
cg00000905 0.0645788 12768
cg00000924 0.4725212 29723
cg00000948 0.8832428 20524

Total number of rows: 485577

Table truncated, full table size 12821 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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