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Sample GSM1009724 Query DataSets for GSM1009724
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 70
Sample type genomic
Source name whole blood 70
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R01C02
well id: C06
age: 23
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3468702 3175
cg00000108 0.9404883 14687
cg00000109 0.827945 7973
cg00000165 0.2497827 3351
cg00000236 0.676202 7346
cg00000289 0.6161256 2703
cg00000292 0.8172606 11742
cg00000321 0.2943262 11180
cg00000363 0.3758731 13644
cg00000622 0.01687681 20283
cg00000658 0.8737901 10541
cg00000714 0.2593892 26127
cg00000721 0.9320273 10007
cg00000734 0.08213323 15107
cg00000769 0.04606561 16116
cg00000807 0.8565389 24736
cg00000884 0.8334987 5948
cg00000905 0.08413557 7483
cg00000924 0.5664069 22744
cg00000948 0.8944846 19518

Total number of rows: 485577

Table truncated, full table size 12736 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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