GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1009723 Query DataSets for GSM1009723
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 69
Sample type genomic
Source name whole blood 69
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R06C01
well id: F07
age: 19
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4437219 7896
cg00000108 0.936029 26115
cg00000109 0.8905702 11862
cg00000165 0.1207593 10541
cg00000236 0.6767021 13618
cg00000289 0.5538548 5257
cg00000292 0.7999541 26064
cg00000321 0.2162538 28644
cg00000363 0.3446685 37188
cg00000622 0.01501223 38735
cg00000658 0.8524419 19045
cg00000714 0.2456936 50638
cg00000721 0.9350203 16182
cg00000734 0.05673389 32526
cg00000769 0.02859827 26510
cg00000807 0.7811167 44193
cg00000884 0.8468945 11428
cg00000905 0.0634532 19505
cg00000924 0.4630136 44484
cg00000948 0.892029 33196

Total number of rows: 485577

Table truncated, full table size 12869 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap