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Sample GSM1009722 Query DataSets for GSM1009722
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 68
Sample type genomic
Source name whole blood 68
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R05C02
well id: C11
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3957068 6981
cg00000108 0.9524795 24542
cg00000109 0.8718699 13238
cg00000165 0.1328792 9149
cg00000236 0.7715538 12218
cg00000289 0.5698515 4882
cg00000292 0.8666461 22599
cg00000321 0.2865171 23389
cg00000363 0.3250057 30401
cg00000622 0.01490329 37073
cg00000658 0.830245 21001
cg00000714 0.2322096 42732
cg00000721 0.9453813 17275
cg00000734 0.05524218 26492
cg00000769 0.02956196 24966
cg00000807 0.8132162 38035
cg00000884 0.8960041 11612
cg00000905 0.06754142 16438
cg00000924 0.4831865 38500
cg00000948 0.897881 28876

Total number of rows: 485577

Table truncated, full table size 12862 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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