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Sample GSM1009721 Query DataSets for GSM1009721
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 67
Sample type genomic
Source name whole blood 67
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R06C01
well id: B06
age: 22
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4157396 4754
cg00000108 0.9503909 25863
cg00000109 0.9027802 11482
cg00000165 0.1643689 9257
cg00000236 0.6970302 14918
cg00000289 0.7050823 4091
cg00000292 0.8245491 25685
cg00000321 0.2243863 21978
cg00000363 0.362638 33592
cg00000622 0.01638106 34330
cg00000658 0.8528835 15194
cg00000714 0.214808 39973
cg00000721 0.9371698 17885
cg00000734 0.05950614 26183
cg00000769 0.03076093 25842
cg00000807 0.8556285 37539
cg00000884 0.8581407 10065
cg00000905 0.07018855 17296
cg00000924 0.4728279 40217
cg00000948 0.8874595 29827

Total number of rows: 485577

Table truncated, full table size 12852 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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