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Sample GSM1009720 Query DataSets for GSM1009720
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 66
Sample type genomic
Source name whole blood 66
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R03C02
well id: E03
age: 39
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3389489 5361
cg00000108 0.9350207 19260
cg00000109 0.8682917 9664
cg00000165 0.1290137 6845
cg00000236 0.6296333 9936
cg00000289 0.5898052 3647
cg00000292 0.7926456 17522
cg00000321 0.2067533 16988
cg00000363 0.2929942 24037
cg00000622 0.009694231 27339
cg00000658 0.8357999 13414
cg00000714 0.1886977 36636
cg00000721 0.9270754 13078
cg00000734 0.06729664 23393
cg00000769 0.03760062 19155
cg00000807 0.8316532 29660
cg00000884 0.8611808 9063
cg00000905 0.07113951 13985
cg00000924 0.4800946 31198
cg00000948 0.8750824 22667

Total number of rows: 485577

Table truncated, full table size 12836 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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