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Sample GSM1009719 Query DataSets for GSM1009719
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 65
Sample type genomic
Source name whole blood 65
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R06C02
well id: D08
age: 35
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.440302 8510
cg00000108 0.9351165 24575
cg00000109 0.8693045 14407
cg00000165 0.1339149 11019
cg00000236 0.6976017 12367
cg00000289 0.6735126 4623
cg00000292 0.8242887 23763
cg00000321 0.2567406 23266
cg00000363 0.3166332 33273
cg00000622 0.01259883 38475
cg00000658 0.8034004 17545
cg00000714 0.2039344 49259
cg00000721 0.929897 16119
cg00000734 0.0605103 29961
cg00000769 0.02102607 24869
cg00000807 0.8369822 40552
cg00000884 0.8482099 12134
cg00000905 0.05760381 19239
cg00000924 0.4516812 41923
cg00000948 0.885493 30885

Total number of rows: 485577

Table truncated, full table size 12865 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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