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Sample GSM1009718 Query DataSets for GSM1009718
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 64
Sample type genomic
Source name whole blood 64
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R02C01
well id: B04
age: 52
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4676234 5614
cg00000108 0.9342342 21583
cg00000109 0.8944482 10293
cg00000165 0.1475585 7375
cg00000236 0.7256737 10588
cg00000289 0.6534135 3723
cg00000292 0.8546898 18536
cg00000321 0.2627002 15884
cg00000363 0.3968774 24303
cg00000622 0.01274589 27046
cg00000658 0.8652167 13188
cg00000714 0.2182066 34404
cg00000721 0.96616 13848
cg00000734 0.06754545 21900
cg00000769 0.037555 18992
cg00000807 0.810819 29681
cg00000884 0.8316759 9453
cg00000905 0.07765009 13126
cg00000924 0.510906 31213
cg00000948 0.8955028 22781

Total number of rows: 485577

Table truncated, full table size 12825 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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