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Sample GSM1009717 Query DataSets for GSM1009717
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 63
Sample type genomic
Source name whole blood 63
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R03C02
well id: A02
age: 36
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3620846 5407
cg00000108 0.93002 19920
cg00000109 0.9073479 9862
cg00000165 0.139298 7165
cg00000236 0.7345105 9697
cg00000289 0.6161058 4060
cg00000292 0.8084791 22190
cg00000321 0.2492011 17111
cg00000363 0.3302956 26455
cg00000622 0.009941562 27964
cg00000658 0.8776973 13571
cg00000714 0.2150262 35784
cg00000721 0.9440895 13672
cg00000734 0.05649995 22254
cg00000769 0.03954618 21318
cg00000807 0.8265358 31284
cg00000884 0.8345786 8466
cg00000905 0.05829247 12749
cg00000924 0.4935021 32064
cg00000948 0.8887754 24382

Total number of rows: 485577

Table truncated, full table size 12830 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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