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Sample GSM1009716 Query DataSets for GSM1009716
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 62
Sample type genomic
Source name whole blood 62
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R03C01
well id: C01
age: 46
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3927223 5726
cg00000108 0.9415677 22456
cg00000109 0.8627 10774
cg00000165 0.1210956 6399
cg00000236 0.6488242 12062
cg00000289 0.5779941 4317
cg00000292 0.8153309 19925
cg00000321 0.2720647 20068
cg00000363 0.4083022 26351
cg00000622 0.01054784 27773
cg00000658 0.8664783 13703
cg00000714 0.1695696 35956
cg00000721 0.9383079 15218
cg00000734 0.06090331 23347
cg00000769 0.02631579 20648
cg00000807 0.8195431 32423
cg00000884 0.8362038 8087
cg00000905 0.06867224 14127
cg00000924 0.5319843 32416
cg00000948 0.8747743 25374

Total number of rows: 485577

Table truncated, full table size 12837 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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