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Sample GSM1009715 Query DataSets for GSM1009715
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 61
Sample type genomic
Source name whole blood 61
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R04C02
well id: F06
age: 37
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4364389 4730
cg00000108 0.9455305 20003
cg00000109 0.8666375 9033
cg00000165 0.1517241 6715
cg00000236 0.6933613 9902
cg00000289 0.5457601 3768
cg00000292 0.8178805 19810
cg00000321 0.2789383 16176
cg00000363 0.4186434 24477
cg00000622 0.01407251 26903
cg00000658 0.8418704 12004
cg00000714 0.1967076 32278
cg00000721 0.9057069 14514
cg00000734 0.07104149 21859
cg00000769 0.03819379 21160
cg00000807 0.8256488 31652
cg00000884 0.8352395 8731
cg00000905 0.07833257 10815
cg00000924 0.4814016 28639
cg00000948 0.8561547 23175

Total number of rows: 485577

Table truncated, full table size 12812 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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