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Sample GSM1009714 Query DataSets for GSM1009714
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 60
Sample type genomic
Source name whole blood 60
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R02C02
well id: H07
age: 25
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4236984 4913
cg00000108 0.9361753 20613
cg00000109 0.8745083 10068
cg00000165 0.1619807 7049
cg00000236 0.7118174 11070
cg00000289 0.5801612 4366
cg00000292 0.8353217 15658
cg00000321 0.2665559 20361
cg00000363 0.4011391 25183
cg00000622 0.01597243 26884
cg00000658 0.8587949 15898
cg00000714 0.2321081 32303
cg00000721 0.9382625 13425
cg00000734 0.06277233 21932
cg00000769 0.02791956 19492
cg00000807 0.8471845 28261
cg00000884 0.8433523 10114
cg00000905 0.07699853 12134
cg00000924 0.4917007 31228
cg00000948 0.8919964 23677

Total number of rows: 485577

Table truncated, full table size 12829 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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