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Sample GSM1009713 Query DataSets for GSM1009713
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 59
Sample type genomic
Source name whole blood 59
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R02C01
well id: F08
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3783676 4911
cg00000108 0.9368457 17286
cg00000109 0.8926306 9046
cg00000165 0.1655481 7499
cg00000236 0.6856712 8512
cg00000289 0.6419226 3645
cg00000292 0.8164724 15854
cg00000321 0.2497408 16297
cg00000363 0.3275026 23625
cg00000622 0.01611561 26334
cg00000658 0.8491747 14924
cg00000714 0.2104842 32368
cg00000721 0.9274733 11413
cg00000734 0.06341701 20415
cg00000769 0.03349409 18769
cg00000807 0.8305678 26477
cg00000884 0.8389617 8221
cg00000905 0.06978919 11664
cg00000924 0.4330937 27162
cg00000948 0.8928121 19725

Total number of rows: 485577

Table truncated, full table size 12821 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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