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Sample GSM1009712 Query DataSets for GSM1009712
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 58
Sample type genomic
Source name whole blood 58
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R02C01
well id: F05
age: 45
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: no
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5494533 3924
cg00000108 0.9180292 18370
cg00000109 0.8752985 9531
cg00000165 0.1789883 5297
cg00000236 0.6977902 9539
cg00000289 0.6242331 2508
cg00000292 0.8552989 16092
cg00000321 0.3026374 13550
cg00000363 0.3224241 19058
cg00000622 0.01761967 23737
cg00000658 0.8637452 12428
cg00000714 0.1986281 29639
cg00000721 0.899415 12208
cg00000734 0.06065907 17622
cg00000769 0.03056228 17667
cg00000807 0.8156092 25449
cg00000884 0.8100746 7940
cg00000905 0.07137701 10982
cg00000924 0.5020655 23865
cg00000948 0.8947153 19466

Total number of rows: 485577

Table truncated, full table size 12781 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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