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Sample GSM1009711 Query DataSets for GSM1009711
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 57
Sample type genomic
Source name whole blood 57
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R02C02
well id: D06
age: 36
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4703099 4127
cg00000108 0.9352869 17918
cg00000109 0.909946 9150
cg00000165 0.1734494 5527
cg00000236 0.7084731 9436
cg00000289 0.6178179 2998
cg00000292 0.8315119 15913
cg00000321 0.3204628 14248
cg00000363 0.4191809 19190
cg00000622 0.01666904 20957
cg00000658 0.876893 12182
cg00000714 0.2646472 27994
cg00000721 0.9250155 12796
cg00000734 0.08137522 16072
cg00000769 0.03923642 16925
cg00000807 0.858721 26061
cg00000884 0.8537313 8275
cg00000905 0.08946795 9993
cg00000924 0.5401008 24912
cg00000948 0.9039578 20568

Total number of rows: 485577

Table truncated, full table size 12784 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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