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Sample GSM1009710 Query DataSets for GSM1009710
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 56
Sample type genomic
Source name whole blood 56
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R03C02
well id: A05
age: 28
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4502132 6468
cg00000108 0.9479059 20171
cg00000109 0.9058195 10571
cg00000165 0.1539141 7820
cg00000236 0.7325308 11363
cg00000289 0.6776071 4196
cg00000292 0.8326391 18865
cg00000321 0.2819687 17597
cg00000363 0.3286067 25006
cg00000622 0.01088742 26077
cg00000658 0.8468077 14842
cg00000714 0.2538579 35995
cg00000721 0.9515721 13735
cg00000734 0.06736784 21483
cg00000769 0.03571957 20169
cg00000807 0.8330979 31751
cg00000884 0.8641235 9232
cg00000905 0.07943454 11784
cg00000924 0.4992079 30831
cg00000948 0.8864171 24129

Total number of rows: 485577

Table truncated, full table size 12834 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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