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Sample GSM1009709 Query DataSets for GSM1009709
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 55
Sample type genomic
Source name whole blood 55
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R04C02
well id: B02
age: 41
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4833359 6351
cg00000108 0.9343648 22845
cg00000109 0.9106502 11327
cg00000165 0.141125 8807
cg00000236 0.6854365 11834
cg00000289 0.6301523 4364
cg00000292 0.8172958 20934
cg00000321 0.3019005 21947
cg00000363 0.3873958 28811
cg00000622 0.009986249 30442
cg00000658 0.8562392 14918
cg00000714 0.2145365 39208
cg00000721 0.9359908 16382
cg00000734 0.05413729 24578
cg00000769 0.02982464 21057
cg00000807 0.8203777 33682
cg00000884 0.8369722 10297
cg00000905 0.07257845 14560
cg00000924 0.4909629 35033
cg00000948 0.8909491 24870

Total number of rows: 485577

Table truncated, full table size 12846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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