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Sample GSM1009708 Query DataSets for GSM1009708
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 54
Sample type genomic
Source name whole blood 54
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R04C02
well id: B11
age: 20
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3870486 7266
cg00000108 0.9372016 22098
cg00000109 0.8636512 12192
cg00000165 0.1082231 8595
cg00000236 0.6948676 13422
cg00000289 0.642079 4306
cg00000292 0.8429232 23258
cg00000321 0.2126684 17566
cg00000363 0.3405629 27011
cg00000622 0.01806519 30456
cg00000658 0.8395741 19716
cg00000714 0.2189548 39415
cg00000721 0.9499046 15091
cg00000734 0.06076033 24258
cg00000769 0.03681984 23773
cg00000807 0.8345104 33884
cg00000884 0.8591087 11164
cg00000905 0.075951 15410
cg00000924 0.5137284 34864
cg00000948 0.8815762 29210

Total number of rows: 485577

Table truncated, full table size 12859 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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