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Sample GSM1009707 Query DataSets for GSM1009707
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 53
Sample type genomic
Source name whole blood 53
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R04C02
well id: F03
age: 25
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3182518 6398
cg00000108 0.9355279 17489
cg00000109 0.8985655 7777
cg00000165 0.1166014 6032
cg00000236 0.6697831 7922
cg00000289 0.457706 3553
cg00000292 0.852541 21289
cg00000321 0.2588373 20438
cg00000363 0.3140338 25531
cg00000622 0.01150081 31463
cg00000658 0.8649315 12886
cg00000714 0.2007198 39358
cg00000721 0.9264541 10628
cg00000734 0.07903439 27116
cg00000769 0.0281269 22974
cg00000807 0.8138667 33924
cg00000884 0.8658066 8194
cg00000905 0.07298979 12436
cg00000924 0.4579481 33644
cg00000948 0.8701543 27502

Total number of rows: 485577

Table truncated, full table size 12823 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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