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Sample GSM1009706 Query DataSets for GSM1009706
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 52
Sample type genomic
Source name whole blood 52
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R01C01
well id: A04
age: 33
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3882588 4397
cg00000108 0.9190549 16998
cg00000109 0.8725975 9005
cg00000165 0.172337 6190
cg00000236 0.6616526 10005
cg00000289 0.5694315 3119
cg00000292 0.7907633 15490
cg00000321 0.279675 14424
cg00000363 0.3528613 22005
cg00000622 0.01749031 24142
cg00000658 0.8383297 10341
cg00000714 0.2013825 28254
cg00000721 0.9212332 11123
cg00000734 0.06534028 17944
cg00000769 0.02703044 15734
cg00000807 0.7886869 24385
cg00000884 0.7976159 7534
cg00000905 0.06312467 11306
cg00000924 0.4647599 26262
cg00000948 0.8791431 19179

Total number of rows: 485577

Table truncated, full table size 12800 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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