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Sample GSM1009705 Query DataSets for GSM1009705
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 51
Sample type genomic
Source name whole blood 51
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475011
sentrix position: R05C01
well id: A06
age: 31
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.495629 5162
cg00000108 0.9450189 23399
cg00000109 0.8754694 11351
cg00000165 0.213006 7435
cg00000236 0.7141082 11170
cg00000289 0.5508543 3587
cg00000292 0.8298992 20235
cg00000321 0.2557922 16992
cg00000363 0.3730077 26189
cg00000622 0.01840878 31624
cg00000658 0.8614029 14085
cg00000714 0.2117551 37722
cg00000721 0.924693 16512
cg00000734 0.05752154 22761
cg00000769 0.03503513 22249
cg00000807 0.8576168 32755
cg00000884 0.8682505 9160
cg00000905 0.08051518 13177
cg00000924 0.5087579 31129
cg00000948 0.8912013 27097

Total number of rows: 485577

Table truncated, full table size 12829 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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