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Sample GSM1009704 Query DataSets for GSM1009704
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 50
Sample type genomic
Source name whole blood 50
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R05C01
well id: A03
age: 32
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3782221 5952
cg00000108 0.9506849 22165
cg00000109 0.8706127 11895
cg00000165 0.1432395 7747
cg00000236 0.6982889 12465
cg00000289 0.5923793 4414
cg00000292 0.8308591 20782
cg00000321 0.3300132 19578
cg00000363 0.3360738 29578
cg00000622 0.008994881 33697
cg00000658 0.8749003 14952
cg00000714 0.2168038 42450
cg00000721 0.9313272 15685
cg00000734 0.05414271 27032
cg00000769 0.02942777 23789
cg00000807 0.790442 34196
cg00000884 0.8529126 10200
cg00000905 0.06830584 15843
cg00000924 0.4846107 36224
cg00000948 0.8984868 27325

Total number of rows: 485577

Table truncated, full table size 12846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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