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Sample GSM1009703 Query DataSets for GSM1009703
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 49
Sample type genomic
Source name whole blood 49
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R06C01
well id: B03
age: 18
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5029181 5897
cg00000108 0.9351956 23957
cg00000109 0.8844388 10786
cg00000165 0.1750248 7956
cg00000236 0.6952087 12840
cg00000289 0.6088607 4640
cg00000292 0.8326063 23742
cg00000321 0.2512667 23584
cg00000363 0.2956804 29486
cg00000622 0.01157219 35589
cg00000658 0.8395421 15711
cg00000714 0.1827752 47587
cg00000721 0.944133 15777
cg00000734 0.04571448 29628
cg00000769 0.03170248 26144
cg00000807 0.8172359 40072
cg00000884 0.8077002 9718
cg00000905 0.06836285 17351
cg00000924 0.498322 41915
cg00000948 0.8896486 32514

Total number of rows: 485577

Table truncated, full table size 12852 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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