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Sample GSM1009702 Query DataSets for GSM1009702
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 48
Sample type genomic
Source name whole blood 48
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467020
sentrix position: R01C02
well id: C03
age: 63
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3010847 3311
cg00000108 0.9368127 15995
cg00000109 0.8526413 8532
cg00000165 0.1355042 5612
cg00000236 0.6055817 9897
cg00000289 0.5815739 3026
cg00000292 0.7950335 15444
cg00000321 0.2483646 13811
cg00000363 0.3498469 19500
cg00000622 0.01442417 21877
cg00000658 0.8614017 10701
cg00000714 0.1956606 28429
cg00000721 0.9266409 11037
cg00000734 0.05721631 16626
cg00000769 0.03555821 15002
cg00000807 0.7872063 25225
cg00000884 0.8022038 7160
cg00000905 0.06001847 10730
cg00000924 0.5306082 25416
cg00000948 0.8859422 19583

Total number of rows: 485577

Table truncated, full table size 12791 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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