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Sample GSM1009701 Query DataSets for GSM1009701
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 47
Sample type genomic
Source name whole blood 47
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R03C01
well id: C10
age: 25
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4416082 6168
cg00000108 0.9604426 17343
cg00000109 0.9100314 9759
cg00000165 0.1360742 7124
cg00000236 0.7079783 10228
cg00000289 0.5886628 4028
cg00000292 0.8271575 16308
cg00000321 0.2343492 15650
cg00000363 0.3709558 22927
cg00000622 0.01591773 29364
cg00000658 0.8790669 17604
cg00000714 0.1995444 35897
cg00000721 0.9365183 12187
cg00000734 0.04951478 22055
cg00000769 0.0271555 21148
cg00000807 0.8538853 30554
cg00000884 0.8385044 9956
cg00000905 0.06374325 13423
cg00000924 0.507939 31516
cg00000948 0.8942956 24355

Total number of rows: 485577

Table truncated, full table size 12832 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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