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Sample GSM1009700 Query DataSets for GSM1009700
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 46
Sample type genomic
Source name whole blood 46
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R06C02
well id: H12
age: 31
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4266249 6285
cg00000108 0.9500022 22561
cg00000109 0.8821287 12490
cg00000165 0.1473534 7589
cg00000236 0.766338 10244
cg00000289 0.5051032 4113
cg00000292 0.8298354 22437
cg00000321 0.3242763 21835
cg00000363 0.3536858 28103
cg00000622 0.01660742 35065
cg00000658 0.8277383 17803
cg00000714 0.2183649 42993
cg00000721 0.927887 14197
cg00000734 0.07195059 29045
cg00000769 0.02970974 24774
cg00000807 0.8268981 34579
cg00000884 0.8899311 9921
cg00000905 0.08438704 14689
cg00000924 0.4698207 35537
cg00000948 0.8961148 28624

Total number of rows: 485577

Table truncated, full table size 12840 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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