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Sample GSM1009699 Query DataSets for GSM1009699
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 45
Sample type genomic
Source name whole blood 45
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773475014
sentrix position: R02C02
well id: H04
age: 48
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3766114 5330
cg00000108 0.9356474 19231
cg00000109 0.8586425 10950
cg00000165 0.1474594 6729
cg00000236 0.6484589 10866
cg00000289 0.5800804 4127
cg00000292 0.8300794 17520
cg00000321 0.2726827 16201
cg00000363 0.3563465 22771
cg00000622 0.02063372 23696
cg00000658 0.8364902 13257
cg00000714 0.2314845 33129
cg00000721 0.9223358 13497
cg00000734 0.06512516 18756
cg00000769 0.02890263 19310
cg00000807 0.8248336 27548
cg00000884 0.8455275 8866
cg00000905 0.06130542 12509
cg00000924 0.4804455 27643
cg00000948 0.8854635 22120

Total number of rows: 485577

Table truncated, full table size 12820 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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