GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1009698 Query DataSets for GSM1009698
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 44
Sample type genomic
Source name whole blood 44
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R02C02
well id: H01
age: 37
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: no
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5748489 4369
cg00000108 0.9255444 20382
cg00000109 0.8805243 11191
cg00000165 0.1606583 6280
cg00000236 0.7110289 11524
cg00000289 0.6596016 3816
cg00000292 0.808726 19955
cg00000321 0.2435847 17709
cg00000363 0.3636442 23126
cg00000622 0.01680672 24295
cg00000658 0.8051726 12737
cg00000714 0.2201574 33317
cg00000721 0.9462138 15536
cg00000734 0.04996931 19452
cg00000769 0.03043788 16754
cg00000807 0.8034234 27650
cg00000884 0.7904869 8835
cg00000905 0.07851055 13274
cg00000924 0.5104522 30659
cg00000948 0.9141005 21495

Total number of rows: 485577

Table truncated, full table size 12825 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap