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Sample GSM1009697 Query DataSets for GSM1009697
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 43
Sample type genomic
Source name whole blood 43
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R04C01
well id: D07
age: 40
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4003489 6779
cg00000108 0.926753 20679
cg00000109 0.8948004 11497
cg00000165 0.1099539 11614
cg00000236 0.6858464 13734
cg00000289 0.5272607 4412
cg00000292 0.8173085 24258
cg00000321 0.2186273 19774
cg00000363 0.373264 31221
cg00000622 0.01416973 32293
cg00000658 0.8494477 17555
cg00000714 0.1978991 38551
cg00000721 0.9382195 15536
cg00000734 0.04929939 25235
cg00000769 0.03130698 22387
cg00000807 0.8015256 33068
cg00000884 0.8449599 11110
cg00000905 0.06568184 16282
cg00000924 0.4632563 34559
cg00000948 0.8740293 26041

Total number of rows: 485577

Table truncated, full table size 12858 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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