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Sample GSM1009696 Query DataSets for GSM1009696
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 42
Sample type genomic
Source name whole blood 42
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R04C01
well id: D10
age: 34
diseasestatus (1=control, 2=scz patient): 2
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.34201 5701
cg00000108 0.9380059 23499
cg00000109 0.8950871 11319
cg00000165 0.1371616 8729
cg00000236 0.6765739 12988
cg00000289 0.6561469 4748
cg00000292 0.8635088 20927
cg00000321 0.2295452 19822
cg00000363 0.33705 26178
cg00000622 0.01323176 32322
cg00000658 0.8730103 20067
cg00000714 0.1988021 38300
cg00000721 0.9238696 14651
cg00000734 0.05911494 23921
cg00000769 0.03053639 22365
cg00000807 0.823274 32838
cg00000884 0.8521836 11509
cg00000905 0.0607048 16472
cg00000924 0.4862302 33016
cg00000948 0.9006839 26220

Total number of rows: 485577

Table truncated, full table size 12859 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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