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Sample GSM1009695 Query DataSets for GSM1009695
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 41
Sample type genomic
Source name whole blood 41
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R05C01
well id: E07
age: 24
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4121195 6864
cg00000108 0.9352874 26000
cg00000109 0.8873871 14401
cg00000165 0.1435934 9796
cg00000236 0.6901651 14979
cg00000289 0.6049503 5031
cg00000292 0.8455749 23685
cg00000321 0.2345427 24403
cg00000363 0.3398546 30978
cg00000622 0.01244393 36464
cg00000658 0.8513159 18974
cg00000714 0.2304005 47261
cg00000721 0.9369668 16193
cg00000734 0.05656059 27428
cg00000769 0.03202162 24321
cg00000807 0.8379829 38649
cg00000884 0.8846626 12940
cg00000905 0.07199029 17194
cg00000924 0.4941385 39395
cg00000948 0.9066473 28769

Total number of rows: 485577

Table truncated, full table size 12867 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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