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Sample GSM1009694 Query DataSets for GSM1009694
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 40
Sample type genomic
Source name whole blood 40
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467012
sentrix position: R06C01
well id: B09
age: 26
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.5216829 6080
cg00000108 0.9296116 26751
cg00000109 0.9064434 13154
cg00000165 0.1701136 8700
cg00000236 0.6802781 14569
cg00000289 0.6245132 4779
cg00000292 0.8635345 23547
cg00000321 0.2608824 23608
cg00000363 0.3538684 29589
cg00000622 0.01070041 38777
cg00000658 0.8763149 19102
cg00000714 0.189172 45578
cg00000721 0.9425384 17738
cg00000734 0.0516644 29340
cg00000769 0.0360923 28244
cg00000807 0.7974883 43695
cg00000884 0.8634773 12191
cg00000905 0.05262608 19054
cg00000924 0.5054772 41253
cg00000948 0.8923339 35185

Total number of rows: 485577

Table truncated, full table size 12863 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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