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Sample GSM1009693 Query DataSets for GSM1009693
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 39
Sample type genomic
Source name whole blood 39
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R04C02
well id: F12
age: 21
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4190129 5938
cg00000108 0.928342 19200
cg00000109 0.8630483 9407
cg00000165 0.1850336 6742
cg00000236 0.7189376 9727
cg00000289 0.5708492 3845
cg00000292 0.844385 19339
cg00000321 0.2618267 16980
cg00000363 0.3297014 24680
cg00000622 0.01164042 30569
cg00000658 0.8671256 17187
cg00000714 0.2190407 34090
cg00000721 0.9380198 11323
cg00000734 0.06563197 21871
cg00000769 0.0522146 21484
cg00000807 0.8264702 32344
cg00000884 0.829413 9508
cg00000905 0.07303371 12538
cg00000924 0.4663492 28874
cg00000948 0.8825545 26159

Total number of rows: 485577

Table truncated, full table size 12819 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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