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Sample GSM1009692 Query DataSets for GSM1009692
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 38
Sample type genomic
Source name whole blood 38
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467015
sentrix position: R05C01
well id: E10
age: 30
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3614595 6916
cg00000108 0.9231583 25407
cg00000109 0.8886184 12631
cg00000165 0.1419555 9565
cg00000236 0.6495366 14358
cg00000289 0.5635812 5507
cg00000292 0.8097611 19365
cg00000321 0.243381 23242
cg00000363 0.3328311 28440
cg00000622 0.01768951 33988
cg00000658 0.8872494 19554
cg00000714 0.1770969 41973
cg00000721 0.9216463 16568
cg00000734 0.05759741 27054
cg00000769 0.032474 24997
cg00000807 0.8248549 37269
cg00000884 0.8664184 11713
cg00000905 0.06722788 16887
cg00000924 0.4715347 38807
cg00000948 0.8992529 30551

Total number of rows: 485577

Table truncated, full table size 12867 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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