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Sample GSM1009691 Query DataSets for GSM1009691
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 37
Sample type genomic
Source name whole blood 37
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467003
sentrix position: R02C01
well id: B07
age: 28
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.3671646 6728
cg00000108 0.9454801 19801
cg00000109 0.8677848 11646
cg00000165 0.1342047 8469
cg00000236 0.6835645 11144
cg00000289 0.6042375 3723
cg00000292 0.815478 19838
cg00000321 0.2925462 18803
cg00000363 0.3702471 26331
cg00000622 0.01577767 27534
cg00000658 0.8396916 14684
cg00000714 0.2476062 34677
cg00000721 0.9228724 14188
cg00000734 0.05921084 20859
cg00000769 0.03260389 20235
cg00000807 0.8045973 30048
cg00000884 0.8154963 9954
cg00000905 0.07591925 13770
cg00000924 0.4787244 32731
cg00000948 0.9003959 23393

Total number of rows: 485577

Table truncated, full table size 12838 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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