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Sample GSM1009690 Query DataSets for GSM1009690
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 36
Sample type genomic
Source name whole blood 36
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R02C01
well id: F11
age: 38
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4716768 4331
cg00000108 0.9413345 17764
cg00000109 0.8602465 9796
cg00000165 0.1341002 6768
cg00000236 0.7162187 10690
cg00000289 0.5739445 4045
cg00000292 0.8128186 16969
cg00000321 0.2047234 15736
cg00000363 0.3592205 21043
cg00000622 0.02541986 24015
cg00000658 0.8361309 14973
cg00000714 0.2252249 32019
cg00000721 0.9245491 12597
cg00000734 0.07097236 19471
cg00000769 0.03026967 18070
cg00000807 0.8024718 27977
cg00000884 0.8390871 8619
cg00000905 0.06464119 10992
cg00000924 0.5096654 27938
cg00000948 0.889217 22593

Total number of rows: 485577

Table truncated, full table size 12808 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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