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Sample GSM1009689 Query DataSets for GSM1009689
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 35
Sample type genomic
Source name whole blood 35
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R03C02
well id: E12
age: 26
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4462748 5242
cg00000108 0.9307783 19417
cg00000109 0.8932107 11315
cg00000165 0.1476191 7670
cg00000236 0.6835759 11097
cg00000289 0.5804749 4069
cg00000292 0.8236406 17353
cg00000321 0.2615213 17780
cg00000363 0.3903234 23524
cg00000622 0.009790317 25844
cg00000658 0.8525964 16365
cg00000714 0.2516245 32063
cg00000721 0.9098268 13119
cg00000734 0.06324583 20850
cg00000769 0.03401398 18216
cg00000807 0.819662 29134
cg00000884 0.8481038 9762
cg00000905 0.07574604 13036
cg00000924 0.5069492 27889
cg00000948 0.8780138 22960

Total number of rows: 485577

Table truncated, full table size 12823 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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