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Sample GSM1009688 Query DataSets for GSM1009688
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 34
Sample type genomic
Source name whole blood 34
Organism Homo sapiens
Characteristics gender: Male
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467019
sentrix position: R02C01
well id: B01
age: 23
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.42943 5058
cg00000108 0.9255514 19081
cg00000109 0.8896162 11052
cg00000165 0.1558168 6536
cg00000236 0.7245722 12288
cg00000289 0.5759599 3494
cg00000292 0.8374676 19533
cg00000321 0.2872203 17733
cg00000363 0.3800348 24603
cg00000622 0.02053928 29161
cg00000658 0.8604669 12793
cg00000714 0.2399006 34506
cg00000721 0.9194151 14878
cg00000734 0.06166076 22167
cg00000769 0.03358878 18299
cg00000807 0.8366628 29134
cg00000884 0.7567256 9453
cg00000905 0.08467226 13966
cg00000924 0.5244816 31005
cg00000948 0.8928556 22617

Total number of rows: 485577

Table truncated, full table size 12828 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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