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Sample GSM1009687 Query DataSets for GSM1009687
Status Public on Oct 19, 2012
Title genomic DNA from whole blood 33
Sample type genomic
Source name whole blood 33
Organism Homo sapiens
Characteristics gender: Female
sample type: whole blood
plate: PLATE A
sentrix barcode: 5773467014
sentrix position: R05C02
well id: G12
age: 27
diseasestatus (1=control, 2=scz patient): 1
used_in_analysis: yes
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal whole blood sample
Data processing BeadStudio software v3.2. The raw data (non-normalized Unmethylated and Methylated signal intensities) are not available.
Submission date Sep 26, 2012
Last update date Oct 19, 2012
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (1)
GSE41169 Blood DNA methylation profiles in a Dutch population

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Intensity
cg00000029 0.4624545 5946
cg00000108 0.9321802 22563
cg00000109 0.8906427 13141
cg00000165 0.1294479 8359
cg00000236 0.6747245 11607
cg00000289 0.6614292 4546
cg00000292 0.8170511 19195
cg00000321 0.3773293 19326
cg00000363 0.3574212 25307
cg00000622 0.01654815 30417
cg00000658 0.859865 17376
cg00000714 0.258692 37118
cg00000721 0.9418707 15830
cg00000734 0.07056357 23269
cg00000769 0.03676191 20900
cg00000807 0.8453136 32217
cg00000884 0.8505865 10642
cg00000905 0.07512338 16313
cg00000924 0.4869626 31348
cg00000948 0.8910779 25533

Total number of rows: 485577

Table truncated, full table size 12847 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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